DERS TANITIM ve UYGULAMA BİLGİLERİ

Dersin Adı Kodu Yarıyıl T+U+L (saat/hafta) Türü (Z / S) Yerel Kredi AKTS
Biyokimya II BIO 306 Bahar 03+00+00 Zorunlu 3 6
Akademik Birim: Faculty of Engineering and Natural Sciences / Department of Bioinformatics & Genetics
Öğrenim Türü: Örgün Eğitim
Ön Koşullar yok
Öğrenim Dili: İngilizce
Dersin Düzeyi: Lisans
Dersin Koordinatörü: Ebru BİLGET GÜVEN
Dersi Veren(ler): Ebru BİLGET GÜVEN
Dersin Amacı: This course teaches the common organic functional groups that are important in biomolecules and explains how the chemical properties of these functional groups relate to their function. Moreover, it teaches the fundamental energetics of biochemical processes. The course content elaborates the metabolic pathways and the basics of their regulations in health and disease.
Dersin İçeriği: Carbohydrates, lipids and cell membranes, signal-transduction pathways, introduction to intermediary metabolism, major catabolic pathways, energy storage, basics of drug development
Dersin Öğrenme Çıktıları (ÖÇ):
  • 1- Understand the chemical structure of monosaccharides as the simplest carbohydrates, how they are linked to form complex carbohydrates and describe how carbohydrates can be attached to proteins.
  • 2- Describe fatty acids, the key constituent of lipids. Define lipids and list the major kinds of membrane lipids. Describe how phospholipids and glycolipids readily form bimolecular sheets in aqueous media.
  • 3- Distinguish between channels, carriers, and pumps. Examine how the transport of molecules across a membrane may be active or passive.
  • 4- List the components of signal-transduction cascades. Summarize the physiological triggers of, and responses to, release of epinephrine, insulin, and epidermal growth factor. Draw a generalized molecular circuit based on a signal-transduction cascade.
  • 5- Describe how a cell extracts energy and reducing power from its environment and synthesizes the macromolecules. Introduce ATP as the universal currency of free energy in biological systems.
  • 6- Examine glycolysis, which is very tightly controlled, as an energy conversion pathway in many organisms. Explain how glucose can be synthesized from non-carbohydrate precursors.
  • 7- Understand the citric acid cycle is the final common pathway for the oxidation of fuel molecules and serves as a source of building blocks for biosyntheses.
  • 8- Describe how oxidative phosphorylation depends on electron transfer and takes place in mitochondria.
  • 9- Understand the function of Pentose Phosphate Pathway and the key role of glucose-6-phosphate dehydrogenase in protection against reactive oxygen species.
  • 10- Explain how glycogen is synthesized and degraded by different pathways and regulated reciprocally.
  • 11- Discuss the challenges for drug development and describe ways through which drug candidates can be discovered. Delineate the stages of drug development.
Dersin Öğrenme Yöntem ve Teknikleri The course content will be introduced by PowerPoint presentations during the lectures. The required and recommended materials will be uploaded to the KHAS Learn page of the course. JoVE platform, selected review/ research articles will be used to support the course content and help students to review the lecture and visualize the subject. Questions integrating the previously covered lectures into ongoing lecture content will allow students better understand how the concepts are related to each other.


HAFTALIK PROGRAM

HaftaKonularÖn Hazırlık ÖÇ
1 Carbohydrates; Lipids and Cell Membranes The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 1, 2
2 Lipids and Cell Membranes; Membrane Channels and Pumps The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 2, 3
3 Signal Transduction Pathways The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 4
4 Metabolism: Basic Concepts and Design The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 4, 5
5 Glycolysis and Gluconeogenesis The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 6
6 Glycolysis and Gluconeogenesis The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 6
7 Midterm Exam Week The midterm exam will include everything covered in the lectures. The students are also responsible for the material uploaded to the KHAS Learn and the corresponding chapter content of the required textbook. 1 - 6
8 The Citric Acid Cycle The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 7
9 The Citric Acid Cycle; Oxidative Phosphorylation The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 7, 8
10 Oxidative Phosphorylation The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 8
11 Pentose Phosphate Pathway; Glycogen Metabolism The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 9, 10
12 Glycogen Metabolism The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 10
13 Feast of Ramadan no lectures
14 Drug Development The students should read (from the required textbook) the chapter corresponding to the subject of the week before the lecture hours. After the lecture hours, the required and recommended materials (to review the lectures) will be uploaded to the KHAS Learn. 11


ZORUNLU ve ÖNERİLEN OKUMALAR

Required Textbook: Biochemistry (Ninth Edition) Berg JM, Tymoczko JL, Gatto Jr. GJ, Stryer L, WH Freeman/Palgrave Macmillan International Higher Education ISBN-13: 978-1-319-11465-7 ISBN-10: 1-319-11465-2 The research and review articles uploaded to the KHAS Learn are also required. Recommended Textbooks: 1) Principles of Biochemistry (Seventh Edition) Nelson DL, Cox MM, WH Freeman/Palgrave Macmillan International Higher Education ISBN-13: 978-1-4641-2611-6 ISBN-10: 1-4641-2611-9 2) Lippincott Illustrated Reviews: Biochemistry (Seventh Edition) Denise Ferrier, Wolters Kluwer Publishing ISBN-13: 978-1496344496 ISBN-10: 1496344499


DİĞER KAYNAKLAR

JoVE Scientific Video Journal will be used to support the lecture visually.
The links will be available on the KHAS Learn page of the course.
Please activate your JOVE accounts in order to have full access to the links.
Your KHAS e-mail and its password will be your username and password respectively.


DEĞERLENDİRME SİSTEMİ

Yarıyıl İçi ÇalışmalarıSayıKatkı Payı (%)
Katılım 12 -
Final Sınavı 1 35
Ara Sınavlar 1 25
Kısa Sınavlar 12 40
Total: 26 100


İŞ YÜKÜ HESAPLAMASI

EtkinliklerSayısıSüresi (saat)Toplam İş Yükü (saat)
Ders Saati12336
Dersle İlgili Sınıf Dışı Etkinlikler12336
Final Sınavı13030
Ara Sınavlar12525
Kısa Sınavlar12224
Toplam İş Yükü (saat):151


PROGRAM YETERLİLİKLERİ (PY) ve ÖĞRENME ÇIKTILARI (ÖÇ) İLİŞKİSİ

# PY1 PY2 PY3 PY4 PY5 PY6 PY7 PY8 PY9
OC1     3 3   1     3
OC2     3 3   1     3
OC3     3 3   1     3
OC4     3 3   1 2   3
OC5     3 3   1 2   3
OC6     3 3   1     3
OC7     3 3   1     3
OC8     3 3   1     3
OC9     3 3   1     3
OC10     3 3   1     3
OC11     3 3   1 2   3